杨超
个人简介
杨超,理学博士,中国科学院上海免疫与感染研究所,副研究员。本科和硕士毕业于中国海洋大学(2009-2015),博士毕业于军事科学院军事医学研究院微生物流行病研究所(2016-2019)。2019-2021年在深圳市疾病预防控制中心和南方医科大学进行博士后研究。以(共同)第一/通讯作者在Nature Microbiology、The ISME Journal、Emerging Infectious Diseases等国际知名期刊发表SCI论文20余篇。
研究方向
1. 微生物发现和溯源
2. 微生物进化
3. 病原微生物致病和耐药机制
荣誉及获奖情况
1. 中国科学院青年创新促进会—2022年
2. 上海市“科技创新行动计划”启明星项目A类—2023年
3. 中科院上海免疫与感染所“启航人才计划”—2023年
主持与承担主要项目情况
1. 国家自然科学基金(面上项目):副溶血弧菌多位点上位相互作用进化研究,主持;
2. 国家自然科学基金(青年项目):副溶血弧菌大流行株同源重组进化动力学研究,主持;
3. 国家重点研发计划课题,解析肠杆菌/艰难梭菌等继发感染重要菌株起源、遗传学特征和入侵机制,课题骨干。
发表论著情况
1. Zhao B, Lees J A, Wu H, .. Yang C*, Falush D*. Genealogical inference and more flexible sequence clustering using iterative-PopPUNK[J]. Genome Research, 2023, 33(6): 988-998.(IF=7/一区)
2. Zheng L#, Yang C#, Chen P, et al. Vibrio parahaemolyticus from Migratory Birds in China Carries an Extra Copy of tRNA-Gly and Plasmid-Mediated Quinolone Resistance Gene qnrD[J]. Microbiology Spectrum, 2023, 11(4): e02170-22. (IF=3.7/二区)
3. Dai J#, Xu D#, Yang C#, et al. Severe pneumonia and pathogenic damage in human airway epithelium caused by Coxsackievirus B4[J]. Emerging Microbes & Infections, 2023, 12(2): 2261560.(IF=13.2/一区)
4. Yang C#, Li Y#, Jiang M, Wang L, Jiang Y, et al. Outbreak dynamics of foodborne pathogen Vibrio parahaemolyticus over a seventeen year period implies hidden reservoirs. Nature Microbiology, 2022,7(8): 1221-1229 (IF=31/一区);
5. Jiang M#, Yang C#, Kwan P#, Zhang L#, Fan H#, Jin Y, et al. Rapid Multilateral and Integrated Public Health Response to a Cross-City Outbreak of Salmonella Enteritidis Infections Combining Analytical, Molecular, and Genomic Epidemiological Analysis, Frontiers in Microbiology, 2022, 13: 772489 (IF=5.2/二区)
6. Chang Y#, Li X#, Ding L#, Yang C#,Pan Z, et al. Genetic and Functional Differences of Escherichia coli Strains from Colorectal Cancer Mucosal Tissues, Engineering, 2022, 16:210-219.(IF=12.8/一区)
7. Yang C#,Li Y#, Zuo L#, Jiang M, Zhang, X, Xie L, et al. Genomic Epidemiology and Antimicrobial Susceptibility Profile of Enterotoxigenic Escherichia coli From Outpatients With Diarrhea in Shenzhen, China, 2015–2020, Frontiers in Microbiology, 2021, 12:732068(IF=5.2/二区)
8. Yang C#, Jiang M#, Wang X#, Tang X#, Fang S#, Li H, et al. Viral RNA level, serum antibody responses, and transmission risk in recovered COVID-19 patients with recurrent positive SARS-CoV-2 RNA test results: a population-based observational cohort study. Emerging Microbes & Infections, 2020;9(1):2368–78(IF=13.2/一区)
9. Cui Y#*, Yang C#, Qiu H#, Wang H, Yang R, Falush D*. The landscape of coadaptation in Vibrio parahaemolyticus. eLife, 2020, 9: e54136 (IF=7.7/一区)
10. Wang H#, Yang C#*, Sun Z#, Zheng W, Zhang W, Yu H, et al. Genomic epidemiology of Vibrio cholerae reveals the regional and global spread of two epidemic non-toxigenic lineages. PLoS Neglected Tropical Diseases, 2020;14(2):e0008046 (IF=3.8/一区)
11. Jiang M#, Zhu F#, Yang C#, Deng Y, Kwan PSL, Li Y, et al. Whole-Genome Analysis of Salmonella enterica Serovar Enteritidis Isolates in Outbreak Linked to Online Food Delivery, Shenzhen, China, 2018. Emerging Infectious Diseases,2020;26(4) (IF=11.8/一区)
12. Yang C#, Pei X#, Wu Y, Yan L, Yan Y, Song Y, et al. Recent mixing of Vibrio parahaemolyticus populations. The ISME Journal,2019;13(10):2578–88 (IF=11.0/一区)
13. Yang C, Zhang X, Fan H, Li Y, Hu Q, Yang R, et al. Genetic diversity, virulence factors and farm-to-table spread pattern of Vibrio parahaemolyticus food-associated isolates. Food Microbiology. 2019, 84:103270 (IF=5.3/一区)
联系方式
Email:cyang@siii.cas.cn
办公地址:上海市徐汇区岳阳路320号生命科学实验楼